Keto Cheese Stuffed Crust Pizza
- Ready in 30m
- 4.5 g net carbs
- 262 kcal
- Serves 8
This post may contain affiliate links, see our disclaimer.

Confession: when I first thought of this recipe, I envisaged a gooey, stretchy, cheesy, commercial stuffed crust pizza kind of result.
I’ll be honest, I was so disappointed when that’s not how it turned out… until I ate it. Granted, you don’t get that melty stretchy moment, but you do get a crust that is so jam packed with flavor that you want to go back for more, and more. I kept the rest of my toppings super simple but you can use whatever you like, just keep an eye on your carb counts.
This pizza is not just low in carbs, it’s also high in protein, making it perfect for those hungry nights when you need something filling and satisfying.
Recipe Tips & Swaps
Before you dive into making this Keto Cheese Stuffed Crust Pizza, here are a few tips and swaps to help you get the best results:
- Cheese Choices: The recipe calls for string cheese sticks, but you can easily substitute with gruyere or cheddar cut into sticks. Just pick a cheese that melts well for the best stuffed crust experience.
- Crust Handling: The dough can get a bit tricky to work with as it cools, so work quickly when shaping the crust and wrapping the cheese sticks. If it becomes too stiff, you can gently warm it up in the microwave for a few seconds to make it more pliable.
- Topping Ideas: While I kept my toppings simple with tomato passata, basil, and mozzarella, you can mix it up with your favorite low-carb options, such as pepperoni, mushrooms, onion, or tuna. Just remember that extra toppings can add to the carb count, so choose wisely.
How to Make This Keto Pizza Nut-Free
If you need to skip the almond flour, no problem! You can swap it out with 4 heaped tablespoons (48 g/1.7 oz) of coconut flour plus 2 oz (57 g) of cream cheese, or 2 oz (57 g) of flax meal plus 2 oz (57 g) of cream cheese. If you go with coconut flour, be sure to brush the top of the crust with a little melted ghee or olive oil before baking.
How Long Can I Store This Pizza For?
This pizza is best enjoyed fresh, but if you have leftovers, wrap them well and store in the fridge for up to four days. The crust might get a little soggy, so be sure to reheat it before serving to bring back some of that crispness.
You Will Love These Keto Pizza Recipes
Also, don't forget to check out these 12 Low-Carb Pizza Alternatives!
Step-by-step
Preheat oven to 180 °C/ 355 °F (fan assisted), or 200 °C/ 400 °F (conventional).

Place the shredded mozzarella into a microwave safe bowl and heat on high for 1 minute. Remove and stir and then heat in 30 second bursts until the cheese has fully melted.

Add the almond flour and mix to form a dough.
Using a sheet of baking paper, roll the dough out into a larger circle than you want for your pizza.

Place the cheese sticks at regular intervals around the edges and roll to contain the cheese. You will need to work quite quickly here as the dough gets harder to handle as it cools.

Place the baking paper and crust on to a tray and bake for 10 minutes.
When cooked, spread the passata on top of the pizza crust and sprinkle the shredded mozzarella on top.

Lay the slices of fresh mozzarella around and then return to the oven for a further 10 minutes.

Sprinkle with shredded basil and serve with a grind of black pepper. Drizzle with olive oil.
Store, wrapped well, in the refrigerator for up to four days. It will get soggy so reheat before serving.


Recipe
Keto Cheese Stuffed Crust Pizza
★★★★★4.8Easy three-ingredient cheese stuffed low-carb pizza crust topped with fresh tomato sauce, basil and ...
- Hands on
- 10m
- Overall
- 30m
- Servings
- 8
- 4.5 g
- Net carbs
- 17.6 g
- Protein
- 19.2 g
- Fat
- 262
- kcal
Ingredients makes 1 pizza/ 8 slices
- Crust:
- Topping:
Instructions
Preheat oven to 180 °C/ 355 °F (fan assisted), or 200 °C/ 400 °F (conventional).
Place the shredded mozzarella into a microwave safe bowl and heat on high for 1 minute. Remove and stir and then heat in 30 second bursts until the cheese has fully melted.
Add the almond flour and mix to form a dough.
Using a sheet of baking paper, roll the dough out into a larger circle than you want for your pizza.
Place the cheese sticks at regular intervals around the edges and roll to contain the cheese. You will need to work quite quickly here as the dough gets harder to handle as it cools.
Place the baking paper and crust on to a tray and bake for 10 minutes.
When cooked, spread the passata on top of the pizza crust and sprinkle the shredded mozzarella on top.
Lay the slices of fresh mozzarella around and then return to the oven for a further 10 minutes.
Sprinkle with shredded basil and serve with a grind of black pepper. Drizzle with olive oil.
Store, wrapped well, in the refrigerator for up to four days. It will get soggy so reheat before serving.
Nutrition per slice
Carbs 7%Protein 27%Fat 66% of calories
- Net carbs
- 4.5 g
- Total carbs
- 5.7 g
- Fiber
- 1.1 g
- Sugars
- 2 g
- Protein
- 17.6 g
- Fat
- 19.2 g
- Saturated fat
- 9 g
- Calories
- 262 kcal
- Sodium
- 433 mg · 18.8% RDA
- Magnesium
- 44 mg · 10.9% RDA
- Potassium
- 210 mg · 10.5% EMR
Nutrition by ingredient
| Per slice | Net carbs | Protein | Fat | kcal |
|---|---|---|---|---|
| Mozzarella cheese (low moisture, for pizza) | 1.2 g | 5 g | 4.2 g | 63 |
| Almond flour (blanched ground almonds, almond meal) | 0.7 g | 1.8 g | 4.4 g | 49 |
| Cheddar cheese | 0.6 g | 4.3 g | 6.2 g | 76 |
| Tomato purée (paste, unsweetened) | 1.1 g | 0.3 g | 0 g | 6 |
| Basil, fresh | 0 g | 0 g | 0 g | 0 |
| Mozzarella cheese, fresh (for salads) | 0.5 g | 4.5 g | 3 g | 48 |
| Mozzarella cheese (low moisture, for pizza) | 0.4 g | 1.7 g | 1.4 g | 21 |
| Pepper, black, spices | 0 g | 0 g | 0 g | 0 |
| Total | 4.5 g | 17.6 g | 19.2 g | 262 |
Serving size slice
- Gluten free
- Egg free
- Nut free
- Pork free
- Avocado free
- Coconut free
- Fish free
- Shellfish free
- Beef free
- Pescatarian
- Vegetarian
You may also like

Keto Marinated Cheese Balls

Low-Carb Italian Melt Bread Pockets

Keto Mini Pepper Pizza Cups

Keto Skillet Bread with Cheesy Caramelized Onion Dip

The Best Ever Keto Pepperoni Pizza Chaffles

Low-Carb Cheesy Spinach Stuffed Mushrooms

Mackerel Pate with Horseradish

Keto Chocolate Buttercream Truffle Roses

Low-Carb Pizza Scones

Easy Keto Mini Brie Tarts

Easy Keto Cheese Garlic Pizza

Keto Chocolate Covered Caramels

Keto Herb & Cheese Stuffed Mushrooms

Keto Pepperoni Pizza Hot Pockets

Keto Pepperoni Pizza Cups

Easy Low-Carb Snuggled Eggs




Comments & ratings (5)
I never write reviews but this was AMAZING! I can't believe the crust is so easy to make. I think it actually tastes better than fat head dough.
Looks great but can it be made with coconut flour?
Yes you can use coconut flour. I just added some tips for nut-free options in the recipe 😊
My daughter and I made this today. It was delicious!
Thank you Hollie, I'm glad you enjoyed!